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The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus

机译:像折返一样的元素伽利略属于DNA转座子的P超家族,在果蝇属中广泛分布

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摘要

Galileo is the only transposable element (TE) known to have generated natural chromosomal inversions in the genus Drosophila. It was discovered in Drosophila buzzatii and classified as a Foldback-like element because of its long, internally repetitive, terminal inverted repeats (TIRs) and lack of coding capacity. Here, we characterized a seemingly complete copy of Galileo from the D. buzzatii genome. It is 5,406 bp long, possesses 1,229-bp TIRs, and encodes a 912-aa transposase similar to those of the Drosophila melanogaster 1360 (Hoppel) and P elements. We also searched the recently available genome sequences of 12 Drosophila species for elements similar to Dbuz\Galileo by using bioinformatic tools. Galileo was found in six species (ananassae, willistoni, peudoobscura, persimilis, virilis, and mojavensis) from the two main lineages within the Drosophila genus. Our observations place Galileo within the P superfamily of cut-and-paste transposons and extend considerably its phylogenetic distribution. The interspecific distribution of Galileo indicates an ancient presence in the genus, but the phylogenetic tree built with the transposase amino acid sequences contrasts significantly with that of the species, indicating lineage sorting and/or horizontal transfer events. Our results also suggest that Foldback-like elements such as Galileo may evolve from DNA-based transposon ancestors by loss of the transposase gene and disproportionate elongation of TIRs.
机译:伽利略是唯一已知在果蝇属中产生天然染色体倒位的转座因子(TE)。它在果蝇果蝇中被发现,并归类为Foldback样元素,因为其较长的内部重复性末端反向重复(TIR)和缺乏编码能力。在这里,我们从D. buzzatii基因组中鉴定了看似完整的伽利略副本。它长5406 bp,具有1,229 bp的TIR,并且编码与果蝇1360(Hoppel)和P元素相似的912-aa转座酶。我们还使用生物信息学工具搜索了12种果蝇最近可用的基因组序列,寻找与Dbuz \ Galileo相似的元素。在果蝇属的两个主要谱系中发现了六个物种(凤梨,willistoni,peudoobscura,柿子,virilis和mojavensis)中的伽利略。我们的观察结果将伽利略放置在剪切粘贴式转座子的P超家族内,并大大扩展了其系统发育分布。伽利略的种间分布表明该属中存在古老的物种,但是用转座酶氨基酸序列构建的系统发育树与该物种的树形成明显对比,表明谱系排序和/或水平转移事件。我们的研究结果还表明,像Falback一样的元件(如Galileo)可能会因转座酶基因的丢失和TIR的不成比例的延伸而从基于DNA的转座子祖先演变而来。

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